Detailed information of SNP:
|
SNP ID:
sf1215879504(Gbrowse)
Chromosome: chr12 Position: 15879504 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 65.14% | 34.86% |
| All Indica | 761 | 88.30% | 11.70% |
| All Japonica | 496 | 26.01% | 73.99% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 351 | 88.32% | 11.68% |
| Indica II | 206 | 89.81% | 10.19% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215879504 | A->G | LOC_Os12g27096(LOC_Os12g27096.1) | INTRON |