Detailed information of SNP:
|
SNP ID:
sf1215883064(Gbrowse)
Chromosome: chr12 Position: 15883064 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 65.27% | 34.73% |
| All Indica | 774 | 90.05% | 9.95% |
| All Japonica | 492 | 23.78% | 76.22% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 198 | 86.87% | 13.13% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 334 | 9.58% | 90.42% |
| Tropical Japonica | 90 | 75.56% | 24.44% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215883064 | T->C | LOC_Os12g27096(LOC_Os12g27096.1) | INTRON |