Detailed information of SNP:
|
SNP ID:
sf1215883461(Gbrowse)
Chromosome: chr12 Position: 15883461 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 62.43% | 37.57% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 491 | 18.13% | 81.87% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 330 | 5.76% | 94.24% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215883461 | A->G | LOC_Os12g27096(LOC_Os12g27096.1) | INTRON |