Detailed information of SNP:
|
SNP ID:
sf1215883486(Gbrowse)
Chromosome: chr12 Position: 15883486 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.48% | 6.52% |
| All Indica | 784 | 96.43% | 3.57% |
| All Japonica | 489 | 91.00% | 9.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 332 | 95.48% | 4.52% |
| Tropical Japonica | 90 | 74.44% | 25.56% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215883486 | C->T | LOC_Os12g27096(LOC_Os12g27096.1) | INTRON |