Detailed information of SNP:
|
SNP ID:
sf1215883750(Gbrowse)
Chromosome: chr12 Position: 15883750 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 95.37% | 4.63% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 55 | 70.91% | 29.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215883750 | C->T | LOC_Os12g27096(LOC_Os12g27096.1) | INTRON |