Detailed information of SNP:
|
SNP ID:
sf1215890926(Gbrowse)
Chromosome: chr12 Position: 15890926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.46% | 27.54% |
| All Indica | 798 | 73.68% | 26.32% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215890926 | C->T | INTERGENIC | None |