Detailed information of SNP:
|
SNP ID:
sf1215893740(Gbrowse)
Chromosome: chr12 Position: 15893740 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 97.88% | 2.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215893740 | C->G | LOC_Os12g27102(LOC_Os12g27102.1) | INTRON |
| sf1215893740 | C->G | LOC_Os12g27102(LOC_Os12g27102.2) | INTRON |
| sf1215893740 | C->G | LOC_Os12g27102(LOC_Os12g27102.3) | INTRON |