Detailed information of SNP:
|
SNP ID:
sf1215900335(Gbrowse)
Chromosome: chr12 Position: 15900335 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 98.50% | 1.50% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 419 | 95.23% | 4.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 98.13% | 1.87% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 57 | 77.19% | 22.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215900335 | C->T | INTERGENIC | None |