Detailed information of SNP:
|
SNP ID:
sf1215907020(Gbrowse)
Chromosome: chr12 Position: 15907020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.14% | 5.86% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 93.94% | 6.06% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215907020 | C->T | LOC_Os12g27120(LOC_Os12g27120.1) | INTRON |