Detailed information of SNP:
|
SNP ID:
sf1215913332(Gbrowse)
Chromosome: chr12 Position: 15913332 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 92.37% | 7.63% |
| All Indica | 784 | 97.07% | 2.93% |
| All Japonica | 491 | 89.21% | 10.79% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 203 | 96.55% | 3.45% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 57.78% | 42.22% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215913332 | C->G | LOC_Os12g27120(LOC_Os12g27120.1) | INTRON |