Detailed information of SNP:
|
SNP ID:
sf1215913649(Gbrowse)
Chromosome: chr12 Position: 15913649 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 65.45% | 34.55% |
| All Indica | 789 | 89.86% | 10.14% |
| All Japonica | 483 | 21.12% | 78.88% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 206 | 87.38% | 12.62% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 330 | 3.33% | 96.67% |
| Tropical Japonica | 88 | 82.95% | 17.05% |
| Japonica Intermediate | 65 | 27.69% | 72.31% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215913649 | A->G | LOC_Os12g27120(LOC_Os12g27120.1) | Non-Synonymous SNP |