Detailed information of SNP:
|
SNP ID:
sf1215922863(Gbrowse)
Chromosome: chr12 Position: 15922863 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 96.56% | 3.44% |
| All Indica | 792 | 97.10% | 2.90% |
| All Japonica | 482 | 95.64% | 4.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 324 | 97.22% | 2.78% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215922863 | A->G | INTERGENIC | None |