Detailed information of SNP:
|
SNP ID:
sf1215934300(Gbrowse)
Chromosome: chr12 Position: 15934300 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 62.58% | 37.42% |
| All Indica | 794 | 87.15% | 12.85% |
| All Japonica | 489 | 20.25% | 79.75% |
| Aus | 60 | 83.33% | 16.67% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 86 | 62.79% | 37.21% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215934300 | A->G | LOC_Os12g27150(LOC_Os12g27150.1) | Synonymous |