Detailed information of SNP:
|
SNP ID:
sf1215949512(Gbrowse)
Chromosome: chr12 Position: 15949512 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 53.43% | 46.57% |
| All Indica | 744 | 29.84% | 70.16% |
| All Japonica | 489 | 87.93% | 12.07% |
| Aus | 57 | 64.91% | 35.09% |
| Indica I | 344 | 35.47% | 64.53% |
| Indica II | 201 | 22.39% | 77.61% |
| Indica Intermediate | 199 | 27.64% | 72.36% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 87 | 71.26% | 28.74% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215949512 | A->G | INTERGENIC | None |