Detailed information of SNP:
|
SNP ID:
sf1215953080(Gbrowse)
Chromosome: chr12 Position: 15953080 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 52.03% | 47.97% |
| All Indica | 787 | 30.88% | 69.12% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 370 | 24.05% | 75.95% |
| Indica II | 210 | 43.33% | 56.67% |
| Indica Intermediate | 207 | 30.43% | 69.57% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953080 | G->C | INTERGENIC | None |