Detailed information of SNP:
|
SNP ID:
sf1215953316(Gbrowse)
Chromosome: chr12 Position: 15953316 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 62.39% | 37.61% |
| All Indica | 794 | 89.55% | 10.45% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 93.01% | 6.99% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953316 | G->A | INTERGENIC | None |