Detailed information of SNP:
|
SNP ID:
sf1215953675(Gbrowse)
Chromosome: chr12 Position: 15953675 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 94.03% | 5.97% |
| All Indica | 788 | 95.81% | 4.19% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953675 | G->A | INTERGENIC | None |