Detailed information of SNP:
|
SNP ID:
sf1215953719(Gbrowse)
Chromosome: chr12 Position: 15953719 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 50.69% | 49.31% |
| All Indica | 758 | 27.97% | 72.03% |
| All Japonica | 494 | 86.44% | 13.56% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 352 | 23.01% | 76.99% |
| Indica II | 204 | 38.73% | 61.27% |
| Indica Intermediate | 202 | 25.74% | 74.26% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953719 | G->A | INTERGENIC | None |