Detailed information of SNP:
|
SNP ID:
sf1215953791(Gbrowse)
Chromosome: chr12 Position: 15953791 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 61.22% | 38.78% |
| All Indica | 777 | 86.62% | 13.38% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 91.48% | 8.52% |
| Indica II | 206 | 83.50% | 16.50% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953791 | T->C | INTERGENIC | None |