Detailed information of SNP:
|
SNP ID:
sf1215953817(Gbrowse)
Chromosome: chr12 Position: 15953817 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 52.51% | 47.49% |
| All Indica | 773 | 75.42% | 24.58% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 359 | 83.01% | 16.99% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215953817 | G->A | INTERGENIC | None |