Detailed information of SNP:
|
SNP ID:
sf1215955620(Gbrowse)
Chromosome: chr12 Position: 15955620 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 69.77% | 30.23% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 494 | 21.66% | 78.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215955620 | T->C | LOC_Os12g27190(LOC_Os12g27190.1) | INTRON |