Detailed information of SNP:
|
SNP ID:
sf1215956779(Gbrowse)
Chromosome: chr12 Position: 15956779 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 66.78% | 33.22% |
| All Indica | 792 | 95.96% | 4.04% |
| All Japonica | 495 | 15.56% | 84.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 95.65% | 4.35% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215956779 | A->G | LOC_Os12g27190(LOC_Os12g27190.1) | INTRON |