Detailed information of SNP:
|
SNP ID:
sf1215956880(Gbrowse)
Chromosome: chr12 Position: 15956880 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215956880 | A->G | LOC_Os12g27190(LOC_Os12g27190.1) | INTRON |