Detailed information of SNP:
|
SNP ID:
sf1215959946(Gbrowse)
Chromosome: chr12 Position: 15959946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 79.91% | 20.09% |
| All Indica | 793 | 69.99% | 30.01% |
| All Japonica | 484 | 94.42% | 5.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 80.16% | 19.84% |
| Indica II | 210 | 53.33% | 46.67% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 85 | 77.65% | 22.35% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215959946 | C->T | INTERGENIC | None |