Detailed information of SNP:
|
SNP ID:
sf1215963443(Gbrowse)
Chromosome: chr12 Position: 15963443 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 63.14% | 36.86% |
| All Indica | 789 | 52.22% | 47.78% |
| All Japonica | 496 | 85.28% | 14.72% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 368 | 61.96% | 38.04% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 208 | 43.75% | 56.25% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215963443 | G->T | LOC_Os12g27210(LOC_Os12g27210.1) | Non-Synonymous SNP |