Detailed information of SNP:



SNP ID: sf1215964331(Gbrowse)

Chromosome: chr12

Position: 15964331
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1372 68.22% 31.78%
All Indica798 94.99% 5.01%
All Japonica454 16.52% 83.48%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II212 93.40% 6.60%
Indica Intermediate211 88.15% 11.85%
Temperate Japonica298 2.01% 97.99%
Tropical Japonica91 58.24% 41.76%
Japonica Intermediate65 24.62% 75.38%
Group VI/Aromatic14 78.57% 21.43%
Intermediate39 69.23% 30.77%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215964331 G->A LOC_Os12g27210(LOC_Os12g27210.1) UTR_3_PRIME