Detailed information of SNP:
|
SNP ID:
sf1215964331(Gbrowse)
Chromosome: chr12 Position: 15964331 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 68.22% | 31.78% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 454 | 16.52% | 83.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 298 | 2.01% | 97.99% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215964331 | G->A | LOC_Os12g27210(LOC_Os12g27210.1) | UTR_3_PRIME |