Detailed information of SNP:



SNP ID: sf1215965512(Gbrowse)

Chromosome: chr12

Position: 15965512
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 66.03% 33.97%
All Indica799 95.12% 4.88%
All Japonica497 15.09% 84.91%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II213 92.96% 7.04%
Indica Intermediate211 89.10% 10.90%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica94 56.38% 43.62%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215965512 A->G LOC_Os12g27210(LOC_Os12g27210.1) UTR_3_PRIME