Detailed information of SNP:
SNP ID:
sf1215965651(Gbrowse)
Chromosome: chr12 Position: 15965651 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 65.82% | 34.18% |
All Indica | 799 | 94.87% | 5.13% |
All Japonica | 497 | 15.09% | 84.91% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 89.10% | 10.90% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 56.38% | 43.62% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1215965651 | A->T | LOC_Os12g27210(LOC_Os12g27210.1) | UTR_3_PRIME |