Detailed information of SNP:
SNP ID:
sf1215967067(Gbrowse)
Chromosome: chr12 Position: 15967067 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 65.87% | 34.13% |
All Indica | 799 | 94.87% | 5.13% |
All Japonica | 496 | 15.12% | 84.88% |
Aus | 67 | 94.03% | 5.97% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 88.63% | 11.37% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 93 | 56.99% | 43.01% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1215967067 | C->T | INTERGENIC | None |