Detailed information of SNP:



SNP ID: sf1215967673(Gbrowse)

Chromosome: chr12

Position: 15967673
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 65.94% 34.06%
All Indica799 94.74% 5.26%
All Japonica496 15.12% 84.88%
Aus67 97.01% 2.99%
Indica I375 99.47% 0.53%
Indica II213 92.49% 7.51%
Indica Intermediate211 88.63% 11.37%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica93 56.99% 43.01%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215967673 T->C LOC_Os12g27220(LOC_Os12g27220.1) INTRON