Detailed information of SNP:
|
SNP ID:
sf1215968151(Gbrowse)
Chromosome: chr12 Position: 15968151 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 96.39% | 3.61% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215968151 | C->T | LOC_Os12g27220(LOC_Os12g27220.1) | Non-Synonymous SNP |