Detailed information of SNP:
|
SNP ID:
sf1215969840(Gbrowse)
Chromosome: chr12 Position: 15969840 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1317 | 78.66% | 21.34% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 404 | 37.13% | 62.87% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 257 | 10.51% | 89.49% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 55 | 61.82% | 38.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215969840 | T->G | LOC_Os12g27220(LOC_Os12g27220.1) | INTRON |