Detailed information of SNP:
|
SNP ID:
sf1215969942(Gbrowse)
Chromosome: chr12 Position: 15969942 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 60.45% | 39.55% |
| All Indica | 770 | 88.44% | 11.56% |
| All Japonica | 495 | 14.75% | 85.25% |
| Aus | 43 | 86.05% | 13.95% |
| Indica I | 369 | 92.95% | 7.05% |
| Indica II | 194 | 89.69% | 10.31% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215969942 | A->G | LOC_Os12g27220(LOC_Os12g27220.1) | INTRON |