Detailed information of SNP:
|
SNP ID:
sf1215972980(Gbrowse)
Chromosome: chr12 Position: 15972980 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.99% | 49.01% |
| All Indica | 795 | 79.12% | 20.88% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 209 | 49.28% | 50.72% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215972980 | G->A | INTERGENIC | None |