Detailed information of SNP:
|
SNP ID:
sf1215973856(Gbrowse)
Chromosome: chr12 Position: 15973856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 92.80% | 7.20% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 418 | 79.19% | 20.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 265 | 78.11% | 21.89% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 61 | 57.38% | 42.62% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215973856 | G->A | INTERGENIC | None |