Detailed information of SNP:
|
SNP ID:
sf1215974429(Gbrowse)
Chromosome: chr12 Position: 15974429 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.19% | 35.81% |
| All Indica | 794 | 91.81% | 8.19% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215974429 | A->G | INTERGENIC | None |