Detailed information of SNP:
|
SNP ID:
sf1215978595(Gbrowse)
Chromosome: chr12 Position: 15978595 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.98% | 4.02% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215978595 | T->C | LOC_Os12g27230(LOC_Os12g27230.1) | Non-Synonymous SNP |