Detailed information of SNP:
|
SNP ID:
sf1215978736(Gbrowse)
Chromosome: chr12 Position: 15978736 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 58.30% | 41.70% |
| All Indica | 795 | 83.65% | 16.35% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 211 | 79.62% | 20.38% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215978736 | C->A | INTERGENIC | None |