Detailed information of SNP:
|
SNP ID:
sf1215980396(Gbrowse)
Chromosome: chr12 Position: 15980396 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 58.87% | 41.13% |
| All Indica | 793 | 84.62% | 15.38% |
| All Japonica | 494 | 12.55% | 87.45% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 210 | 76.67% | 23.33% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215980396 | T->A | LOC_Os12g27240(LOC_Os12g27240.1) | Non-Synonymous SNP |