Detailed information of SNP:
|
SNP ID:
sf1215980962(Gbrowse)
Chromosome: chr12 Position: 15980962 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 95.19% | 4.81% |
| All Indica | 795 | 95.97% | 4.03% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215980962 | A->G | LOC_Os12g27240(LOC_Os12g27240.1) | Non-Synonymous SNP |