Detailed information of SNP:
|
SNP ID:
sf1215985879(Gbrowse)
Chromosome: chr12 Position: 15985879 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 65.46% | 34.54% |
| All Indica | 795 | 93.96% | 6.04% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215985879 | A->C | INTERGENIC | None |