Detailed information of SNP:
|
SNP ID:
sf1215985961(Gbrowse)
Chromosome: chr12 Position: 15985961 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 65.46% | 34.54% |
| All Indica | 794 | 94.08% | 5.92% |
| All Japonica | 496 | 14.92% | 85.08% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215985961 | C->T | INTERGENIC | None |