Detailed information of SNP:
SNP ID:
sf1215989412(Gbrowse)
Chromosome: chr12 Position: 15989412 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 95.56% | 4.44% |
All Indica | 798 | 97.12% | 2.88% |
All Japonica | 497 | 92.96% | 7.04% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 93.43% | 6.57% |
Indica Intermediate | 210 | 95.71% | 4.29% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 65.96% | 34.04% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1215989412 | T->G | INTERGENIC | None |