Detailed information of SNP:
|
SNP ID:
sf1215989824(Gbrowse)
Chromosome: chr12 Position: 15989824 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 93.22% | 6.78% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 334 | 93.41% | 6.59% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215989824 | T->G | INTERGENIC | None |