Detailed information of SNP:
|
SNP ID:
sf1215992436(Gbrowse)
Chromosome: chr12 Position: 15992436 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 51.07% | 48.93% |
| All Indica | 792 | 86.62% | 13.38% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215992436 | A->C | INTERGENIC | None |