Detailed information of SNP:
|
SNP ID:
sf1215995455(Gbrowse)
Chromosome: chr12 Position: 15995455 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 56.92% | 43.08% |
| All Indica | 775 | 85.29% | 14.71% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 364 | 90.38% | 9.62% |
| Indica II | 206 | 78.64% | 21.36% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215995455 | T->G | INTERGENIC | None |