Detailed information of SNP:
|
SNP ID:
sf1215997148(Gbrowse)
Chromosome: chr12 Position: 15997148 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215997148 | G->A | LOC_Os12g27254(LOC_Os12g27254.1) | INTRON |