Detailed information of SNP:
|
SNP ID:
sf1215998403(Gbrowse)
Chromosome: chr12 Position: 15998403 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 86.51% | 13.49% |
| All Indica | 799 | 83.85% | 16.15% |
| All Japonica | 494 | 96.15% | 3.85% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215998403 | T->C | LOC_Os12g27254(LOC_Os12g27254.1) | INTRON |