Detailed information of SNP:
|
SNP ID:
sf1215999858(Gbrowse)
Chromosome: chr12 Position: 15999858 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 56.71% | 43.29% |
| All Indica | 796 | 79.15% | 20.85% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215999858 | C->G | LOC_Os12g27254(LOC_Os12g27254.1) | INTRON |