Detailed information of SNP:
SNP ID:
sf1215999858(Gbrowse)
Chromosome: chr12 Position: 15999858 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1416 | 56.71% | 43.29% |
All Indica | 796 | 79.15% | 20.85% |
All Japonica | 497 | 14.89% | 85.11% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 373 | 88.47% | 11.53% |
Indica II | 213 | 68.54% | 31.46% |
Indica Intermediate | 210 | 73.33% | 26.67% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 55.32% | 44.68% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1215999858 | C->G | LOC_Os12g27254(LOC_Os12g27254.1) | INTRON |