Detailed information of SNP:



SNP ID: sf1215999858(Gbrowse)

Chromosome: chr12

Position: 15999858
Major allele: G

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1416 56.71% 43.29%
All Indica796 79.15% 20.85%
All Japonica497 14.89% 85.11%
Aus67 95.52% 4.48%
Indica I373 88.47% 11.53%
Indica II213 68.54% 31.46%
Indica Intermediate210 73.33% 26.67%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica94 55.32% 44.68%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215999858 C->G LOC_Os12g27254(LOC_Os12g27254.1) INTRON