Detailed information of SNP:
|
SNP ID:
sf1216001477(Gbrowse)
Chromosome: chr12 Position: 16001477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.55% | 29.45% |
| All Indica | 796 | 54.02% | 45.98% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 34.32% | 65.68% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216001477 | G->A | LOC_Os12g27254(LOC_Os12g27254.1) | INTRON |